PD-Nodes is a collection of nodes designed for Thermo Scientific Proteome Discoverer. It will grow over time and give developers a platform and users the possibilty to download and use new interesting nodes.
A high-speed identification and scoring system for peptides out of tandem mass spectrometry data using a database of known proteins. Especially designed for high resolution and high accuracy tandem mass spectra.
A scoring system to identify peptides in tandem mass spectrometry data using a library of previously identified spectra. Able to create decoy spectral libraries that are to allow for validation of results using the target-decoy approach.
A cross-linking search engine for use with cleavable cross-linkers and MS2 or MS2-MS3 spectra. Able to deal with a wide variety of cleavable cross-linkers and provides robust and transparent FDR control based on a target-decoy approach.