IMP Nodes for Proteome Discoverer 2.1
This package contains free nodes for Proteome Discoverer 2.1, including
- Elutator
- MS Amanda
- PeakJuggler
- MS2 Spectrum Processor
- Normalisation and Limma
- ptmRS
These nodes work with a free version of Proteome Discoverer 2.1. See installation for more information.
What's new?
| Date |
Info |
| 2017-09-13 |
ptmRS updated |
| 2016-11-09 |
Updated Peakjuggler, MsAmanda and the Normalization Node |
| 2016-06-21 |
Added ptmRS, updated Peakjuggler |
| 2016-06-16 |
Elutator and MS2 Spectrum Processor Node now show up if you don't have the base licence of Proteome Discoverer. Also added sample workflows |
| 2106-06-02 |
Initial release |
Details
- Elutator
- is a validation node for PSMs, based on Percolator. It is especially optimized for validating matches from MS Amanda.
- MS Amanda
- is a scoring system for identifying peptides and proteins out of tandem mass spectrometry data, especially designed for high resolution and high accuracy tandem mass spectra. See here for more information.
- PeakJuggler
- is a Proteome Discoverer node for label-free quantification of peptides and proteins. See here for more information.
- MS2 Spectrum
- Processor Deisotoping of isotopic clusters and charge deconvolution. See here for more information.
- Normalisation and Limma
- provide different normalisation methods and an interface for limma.
- ptmRS
- performs site localisation for post translational modifications. See here for more information
Download
Installer.exe
Installation
To get a free version of Proteome Discoverer 2.1, please download the demo software from the Omics portal.
After 60 days the demo license expires but Proteome Discoverer can still be used with the nodes in this package.
With an existing Proteome Discoverer 2.1 installation, please download and install the IMP nodes package.
Support
We have a forum. Feel free to ask questions and give feedback!
