MS2Go is a software tool for converting result files of Thermo Scientific™ Proteome Discoverer™ into user-friendly Excel workbooks. Result items are grouped into several sheets, which utilize Excel's built-in features like hyperlinks, filtering, conditional formatting etc.


  • Windows 7 or higher
  • .NET Framework 4.7 Runtime or higher (download)
  • (optional) R (required if option Quality control is activated) (download)
  • (optional) Proteome Discoverer™ 2.0 or higher (required if option Analysis summary is activated)


The following versions of Proteome Discoverer™ are supported: 2.0, 2.1, 2.2, and 2.3



How to run

  1. Press button ... to browse for input file
  2. Modify samples via Sample editor
  3. Select filters via Filter manager
  4. Press button Export
  5. Finished!

For more info on how to set parameters, please read the user manual.

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