Proteomics Facility

The Proteomics Facility performs a large variety of mass spectrometry experiments, including identification of proteins by peptide sequencing and characterization of post-translational modifications such as phosphorylation. In addition we develop new methods and software for quantification, quality control, site localization of post-translational modifications and general mass spectrometry tools. Finally the facility specializes in antibody purification.

The purpose of this site is to host our main software projects (see above). We are mainly developing Nodes for Proteome Discoverer. Furthermore we also provide some other software tools here.

If you want to submit a sample or if you are interested in some general info about us please visit the core facility site.

Available Proteome Discoverer Nodes

Namev1.3v1.4v2.0v2.1v2.2v2.3v2.4v2.5v3.0v3.1
IMP Nodes Collection---X-X----
IMP-phosphoRSXXXX------
IMP-ptmRS-XXXX-----
IMP-apQuant---X-XXXX-
MS AmandaXX-XXXXXXX
CharmeRT-X--XX----
SugarQb-X-X-XXXX-
MS Ana--------XX
MS Annika-----XXXXX
Spectral Clustering--XX-XX---
IMP-Hyperplex-X-X-XXXX-
IMP-Normalisation & limma---X-XXXX-
IMP-MS2 Spectrum ProcessorXX-X-XXXX-
IMP-Spectrum MergerX---------
IMP-Spectrum FilterXX--------
IMP-RecalibratorXX--------
MS2Go--XXXX----
Node-Manager---XXXX---
Motif A-----X----
MS2GoPreFilter-----XXXX-
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