Mass spectrometry, Protein Chemistry Facility
Research Institute of Molecular Pathology (IMP)
Institute of molecular biotechnology of the Austrian Academy of Sciences (IMBA)
Gregor Mendel Institute of Molecular Plant Biology (GMI)

PD-Nodes SimpatiQCo Software Tools Publications


SimpatiQCo About Download Installation Manual FAQ's

Please note: If you use or install simpatiQCo, you agree to the licenses in the "Licenses" directory (included in the download).

Download
Version Remarks/What's new? Format Size
1.3.2c 16th Feb 2015

  • Just bug fixes.
zip 182 MB download
1.3.2b 12th Feb 2015

  • Just bug fixes.
zip 183 MB
1.3.2 29th Sep 2014

  • Just bug fixes.
Upgrading from version1.3: download this package and just exchange simpatiqco.php in the simpatiqco main directory.
zip 182 MB
1.3 19th Aug 2014
New features:
  • Move mouse over slots (top-right) to see which runs are currently processed.
  • Run-type creation and management made more easily.
  • Simpler database structure for better performance (not like previous versions one table per run, but a few central tables).
  • Some bug fixes.
  • Including our search engine MS Amanda!
Upgrading from previous versions will unfortunately not work, since the database structure changed in a major way.
zip 182 MB
1.1.8 1th Jan 2014
New features:
  • Added read out of CTCD and RawOvFtT factor for Qexactive instruments. RawOvFtT describes charge count
    in FT cell but must be multiplied by CTCD compensation factor for MS1 scan (done by SIMPATIQCO).
    For MS2 (iso < 100) RawOvFtT alone is sufficient.
Upgrading from version 1.1.7: Backup your /inc/conf.php. This file is exchanged, and you will have to enter your settings
in the new conf.php. Download this package and exchange the files listed below
with the new ones by copying them into the corresponding directory:
.\simpatiqco.php
.\settings\settings.php
.\inc\conf.php
.\inc\rawextractor.exe
.\inc\rawextractor.php
.\inc\mascotextractor.php
.\inc\wiffextractor.php
.\database\db_graph.php
.\hotupload\hot_upload.php
.\results\general_results_raw.php
.\results\graph.php
.\log\log.php
Enter your settings in /inc/conf.php.
zip 178 MB
1.1.7 New features:
  • Some bug fixes
Upgrading from version 1.1.6: just download this package and overwrite your SIMPATIQCO directory
with the SIMPATIQCO directory contained in this zip.
Make sure to create a backup first (!) and write back your original CONF.PHP file later.
The conf.php file contains your settings, the one which comes
in the zip, is a default one and SIMPATIQCO will not work with it.
zip 178 MB
1.1.6 1th March 2013
New features:
  • WIFF file support for MSn and SRM experiments
  • A small bar on the upper right gives information about the current workload.
    Parallel file analysing is now limited to three, all others are queued.
  • Mascot Server Version <= 2.4 support
Upgrading from version 1.1.2: just download this package and exchange these files
with the new ones or copy them into the corresponding directory:
.\simpatiqco.php
.\database\database.php
.\database\db_graph.php
.\hotupload\hot_upload.php
.\inc\head.php
.\inc\mascotextractor.php
.\inc\rawextractor.php
.\inc\wiffextractor.php
.\results\general_results_raw.php
.\results\general_results_srm.php
.\results\runs.php
zip 178 MB
1.1.6
Christine Hoogland edition
As version 1.1.6 but with some changes made by Christine Hoogland (Queensland Institute of Medical Research)
Some added features:
  • Root mean square computation for peptides
  • Added taxonomy
  • Used 1st run-type id as default, if rtid is not given in filename
  • Modified modifs for mascot search: removed Phospho, added Deamid
  • Used msconvert.bat which added step to remove peaks with 0-intensity after msconvert.exe
  • Added graphs: ionscore vs ppm, precursor vs ppm
  • Showing acquisition date in runs list
To install this version, install version 1.1.6 then apply the changes described in the .zip file from Christine Hoogland.
If you have any questions regrading her changes, please contact her directly. e-mailadr is in redme.txt.
zip 0.2 MB
1.1.2 New features:
  • Mascot Server Version <= 2.4 support
  • New PeakAnalyzer version (1.0.0.11)
Upgrading from version 1.1.1: just download this package and exchange these files with the new ones:
mascotextractor.php, simpatiqco.php, settings.php and PeakAnalyzer.exe
zip 178 MB
1.1.1 Features:
  • Automated peak data analyzing from MS1 scans for Thermo raw files:
  • Area integration
    FWHM
    Intesity
    Retention time at apex
  • Log entries now removable
  • Hot folder uploads do not start parellel anymore
  • Minor bug fixes.
Please note that an upgrade from older versions is not possible because of a different database structure.
zip 178 MB
1.1.0 Features:
  • Automated peak data analyzing from MS1 scans for Thermo raw files:
  • Area integration
    FWHM
    Intesity
    Retention time at apex
  • Minor bug fixes.
Please note that an upgrade from older versions is not possible because of a different database structure.
zip 178 MB
1.0.7 Features:
  • Intruduced datepicker for peptide list graphs.
  • Minor bug fixes (hot folder).
Please note that an upgrade from older versions is not possible because of a different database structure.
zip 178 MB
1.0.6 This version features:
  • Hot-folder, start files automatically when they are copied to the hot folder.
  • More comfort using the FTP or direct copy upload.
  • Posibility to manualy edit peak data (area, height and fwhm).
  • Minor bug fixes.
Please note that an upgrade from older versions is not possible because of a different database structure.
zip 170 MB
1.0.4 Password protected
This new version features:
  • A new log system. Log entries can now be pre-defined and shown/hidden in the time-course graphs with one click.
  • FTP or direct copy upload for proecessing huge files (>2GB and multiple files at once).
Please note that an upgrade from older versions is not possible because of a different database structure.
zip 178 MB
1.0.2 Password protected zip 170 MB
1.0.0 Password protected zip 171 MB