SugarQb logo

SugarQb is a collection of software tools (Nodes) which enables the automated identification of intact glycopeptides from HCD‐MS/MS data sets, using common MS/MS search engines (e.g. MASCOT, SEQUEST‐HT) in the Proteome Discoverer 1.4 environment.

Downloads for 6 PD versions
PD3.0
IMP.SugarQb.3.0.zip 28.2 KB · 2022-09-06 SHA-256 a14dab39df760e43949b923bf5766ec70ecd9c1110214fdd2ee404a0e918e951
SHA-256a14dab39df760e43949b923bf5766ec70ecd9c1110214fdd2ee404a0e918e951
MD52d5d31d544560af593245e9617e685c8

Downloads the file and checks its SHA-256; a click selects a whole checksum or command.

$ProgressPreference = 'SilentlyContinue'; $f = 'IMP.SugarQb.3.0.zip'; Invoke-WebRequest -Uri 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQb.3.0.zip' -OutFile $f; if ((Get-FileHash $f -Algorithm SHA256).Hash -eq 'a14dab39df760e43949b923bf5766ec70ecd9c1110214fdd2ee404a0e918e951') { "OK: $f" } else { Remove-Item $f; Write-Error 'Checksum mismatch, file deleted' }
curl -fL -o 'IMP.SugarQb.3.0.zip' 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQb.3.0.zip' && echo 'a14dab39df760e43949b923bf5766ec70ecd9c1110214fdd2ee404a0e918e951  IMP.SugarQb.3.0.zip' | sha256sum -c -
curl -fL -o 'IMP.SugarQb.3.0.zip' 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQb.3.0.zip' && echo 'a14dab39df760e43949b923bf5766ec70ecd9c1110214fdd2ee404a0e918e951  IMP.SugarQb.3.0.zip' | shasum -a 256 -c -
PD2.5
IMP.SugarQb.2.5.zip 28.1 KB · 2022-09-06 SHA-256 c85a620a114cb6e5fc91168b5de0a92b97e130bf716b79b0c5fb7a8ccef259bc
SHA-256c85a620a114cb6e5fc91168b5de0a92b97e130bf716b79b0c5fb7a8ccef259bc
MD54fe72b79d063e921cf9999f234470860

Downloads the file and checks its SHA-256; a click selects a whole checksum or command.

$ProgressPreference = 'SilentlyContinue'; $f = 'IMP.SugarQb.2.5.zip'; Invoke-WebRequest -Uri 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQb.2.5.zip' -OutFile $f; if ((Get-FileHash $f -Algorithm SHA256).Hash -eq 'c85a620a114cb6e5fc91168b5de0a92b97e130bf716b79b0c5fb7a8ccef259bc') { "OK: $f" } else { Remove-Item $f; Write-Error 'Checksum mismatch, file deleted' }
curl -fL -o 'IMP.SugarQb.2.5.zip' 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQb.2.5.zip' && echo 'c85a620a114cb6e5fc91168b5de0a92b97e130bf716b79b0c5fb7a8ccef259bc  IMP.SugarQb.2.5.zip' | sha256sum -c -
curl -fL -o 'IMP.SugarQb.2.5.zip' 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQb.2.5.zip' && echo 'c85a620a114cb6e5fc91168b5de0a92b97e130bf716b79b0c5fb7a8ccef259bc  IMP.SugarQb.2.5.zip' | shasum -a 256 -c -
PD2.4
IMP.SugarQb.2.4.zip 28.1 KB · 2022-09-06 SHA-256 d61d1db40ab906df1a4477fde8d3a9e8d21d78ad58c4df637132ba81b7d63b6e
SHA-256d61d1db40ab906df1a4477fde8d3a9e8d21d78ad58c4df637132ba81b7d63b6e
MD59aa8488d3b87f395e5d53a4dbc04f1cd

Downloads the file and checks its SHA-256; a click selects a whole checksum or command.

$ProgressPreference = 'SilentlyContinue'; $f = 'IMP.SugarQb.2.4.zip'; Invoke-WebRequest -Uri 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQb.2.4.zip' -OutFile $f; if ((Get-FileHash $f -Algorithm SHA256).Hash -eq 'd61d1db40ab906df1a4477fde8d3a9e8d21d78ad58c4df637132ba81b7d63b6e') { "OK: $f" } else { Remove-Item $f; Write-Error 'Checksum mismatch, file deleted' }
curl -fL -o 'IMP.SugarQb.2.4.zip' 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQb.2.4.zip' && echo 'd61d1db40ab906df1a4477fde8d3a9e8d21d78ad58c4df637132ba81b7d63b6e  IMP.SugarQb.2.4.zip' | sha256sum -c -
curl -fL -o 'IMP.SugarQb.2.4.zip' 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQb.2.4.zip' && echo 'd61d1db40ab906df1a4477fde8d3a9e8d21d78ad58c4df637132ba81b7d63b6e  IMP.SugarQb.2.4.zip' | shasum -a 256 -c -
PD2.3
IMP.SugarQB.2.3.zip 28.1 KB · 2022-09-06 SHA-256 c669f627523513852fd58d295c733497dde31bbf2c53df0fc1d6b95868e4fb14
SHA-256c669f627523513852fd58d295c733497dde31bbf2c53df0fc1d6b95868e4fb14
MD5b08c39b606b2fddf96986c8109cbfd10

Downloads the file and checks its SHA-256; a click selects a whole checksum or command.

$ProgressPreference = 'SilentlyContinue'; $f = 'IMP.SugarQB.2.3.zip'; Invoke-WebRequest -Uri 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQB.2.3.zip' -OutFile $f; if ((Get-FileHash $f -Algorithm SHA256).Hash -eq 'c669f627523513852fd58d295c733497dde31bbf2c53df0fc1d6b95868e4fb14') { "OK: $f" } else { Remove-Item $f; Write-Error 'Checksum mismatch, file deleted' }
curl -fL -o 'IMP.SugarQB.2.3.zip' 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQB.2.3.zip' && echo 'c669f627523513852fd58d295c733497dde31bbf2c53df0fc1d6b95868e4fb14  IMP.SugarQB.2.3.zip' | sha256sum -c -
curl -fL -o 'IMP.SugarQB.2.3.zip' 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQB.2.3.zip' && echo 'c669f627523513852fd58d295c733497dde31bbf2c53df0fc1d6b95868e4fb14  IMP.SugarQB.2.3.zip' | shasum -a 256 -c -
PD2.1
IMP.SugarQB.2.1.zip 81.3 KB · 2018-11-23 SHA-256 802aa6559334fcab65a634e2c0ae26ddf4722710d9a0604c28e038ed4ca6c7d7
SHA-256802aa6559334fcab65a634e2c0ae26ddf4722710d9a0604c28e038ed4ca6c7d7
MD5872f3d06ca930a9d7df501bab417d2e6

Downloads the file and checks its SHA-256; a click selects a whole checksum or command.

$ProgressPreference = 'SilentlyContinue'; $f = 'IMP.SugarQB.2.1.zip'; Invoke-WebRequest -Uri 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQB.2.1.zip' -OutFile $f; if ((Get-FileHash $f -Algorithm SHA256).Hash -eq '802aa6559334fcab65a634e2c0ae26ddf4722710d9a0604c28e038ed4ca6c7d7') { "OK: $f" } else { Remove-Item $f; Write-Error 'Checksum mismatch, file deleted' }
curl -fL -o 'IMP.SugarQB.2.1.zip' 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQB.2.1.zip' && echo '802aa6559334fcab65a634e2c0ae26ddf4722710d9a0604c28e038ed4ca6c7d7  IMP.SugarQB.2.1.zip' | sha256sum -c -
curl -fL -o 'IMP.SugarQB.2.1.zip' 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQB.2.1.zip' && echo '802aa6559334fcab65a634e2c0ae26ddf4722710d9a0604c28e038ed4ca6c7d7  IMP.SugarQB.2.1.zip' | shasum -a 256 -c -
PD1.4
IMP.SugarQb.zip 45.1 KB · 2017-09-19 SHA-256 677e3ddff8646766c1f66d4ddc596747a25f76f87ba4435727bed94f5d6a9ac8
SHA-256677e3ddff8646766c1f66d4ddc596747a25f76f87ba4435727bed94f5d6a9ac8
MD5a5d1138eab32cb00ea71268c2d55072e

Downloads the file and checks its SHA-256; a click selects a whole checksum or command.

$ProgressPreference = 'SilentlyContinue'; $f = 'IMP.SugarQb.zip'; Invoke-WebRequest -Uri 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQb.zip' -OutFile $f; if ((Get-FileHash $f -Algorithm SHA256).Hash -eq '677e3ddff8646766c1f66d4ddc596747a25f76f87ba4435727bed94f5d6a9ac8') { "OK: $f" } else { Remove-Item $f; Write-Error 'Checksum mismatch, file deleted' }
curl -fL -o 'IMP.SugarQb.zip' 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQb.zip' && echo '677e3ddff8646766c1f66d4ddc596747a25f76f87ba4435727bed94f5d6a9ac8  IMP.SugarQb.zip' | sha256sum -c -
curl -fL -o 'IMP.SugarQb.zip' 'https://ms.imp.ac.at/data/sugarqb/IMP.SugarQb.zip' && echo '677e3ddff8646766c1f66d4ddc596747a25f76f87ba4435727bed94f5d6a9ac8  IMP.SugarQb.zip' | shasum -a 256 -c -

Not supported: PD1.3, PD2.0, PD2.2, PD3.1, PD3.2, PD3.3.

Introduction

SugarQb is freely available to all researchers.

For further information on the algorithm, please refer to the corresponding publication
Stadlmann J., Taubenschmid J., et al. Comparative glycoproteomics of stem cells identifies new players in ricin toxicity, Nature (2017).

We also provide a quick guide on how to download, install and test SugarQb.

Contact: SugarQb@imba.oeaw.ac.at

Downloads

Optional nodes